Cheap Flights from San Juan to Jacksonville, FL from $87

On Cheapflightsplus.com you will find 1 direct and 112 connecting flights from San Juan to Jacksonville. You can compare airfare deals from 5 airlines and multiple travel sites from $87, book and save on cheap plane tickets and last minute offers. Also check out SJU-JAX flight schedule to find best flight time, convenient departure and arrival airports.

Find One-Way and Round-Trip San Juan to Jacksonville Flight Deals

To find the cheapest one way airline ticket select the date with the lowest price on the calendar below and click «Find Flights». To search for round-trip flight deals click on the link «Check prices for return flights» and select the date of the return flight. Cheapest flights in November: $87 (one-way), $149 (round-trip).
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Full flight schedule will help you in detecting at what time planes fly from San Juan to Jacksonville. You can also specify the concrete flights and airlines on the route and how long the flight actually is. Use the calendar for today, tomorrow or other specific date as some flights are available only on certain days of the week.
Departure Arrival Flight Details Flight Duration Price
07:00 — 10:20
07:00 — 10:20 F93305 Frontier Airlines
San Juan — Jacksonville
3h 20m
Find flight
from$87
00:59 — 11:50
00:59 — 05:00 F91015 Frontier Airlines
San Juan — Philadelphia
4h 30m stop
09:30 — 11:50 F92815 Frontier Airlines
Philadelphia — Jacksonville
10h 51m
including layover
Find flight
from$174
01:05 — 09:10
02:05 — 05:22 UA2219 United Airlines
San Juan — Newark
1h 31m stop
07:30 — 10:03 UA1207 United Airlines
Newark — Jacksonville
8h 5m
including layover
Find flight
from$214
07:00 — 15:13
07:00 — 10:51 UA1644 United Airlines
San Juan — Houston
1h 4m stop
14:30 — 17:51 UA6100 United Airlines
Houston — Jacksonville
8h 13m
including layover
Find flight
from$213
13:30 — 21:20
13:30 — 17:40 UA1173 United Airlines
San Juan — Newark
1h 3m stop
18:43 — 21:20 UA2392 United Airlines
Newark — Jacksonville
7h 50m
including layover
Find flight
from$165
14:55 — 23:13
14:55 — 18:46 UA668 United Airlines
San Juan — Houston
1h 9m stop
19:55 — 23:13 UA667 United Airlines
Houston — Jacksonville
8h 18m
including layover
Find flight
from$165
14:55 — 23:40
14:55 — 18:52 UA668 United Airlines
San Juan — Houston
1h 25m stop
20:17 — 23:40 UA283 United Airlines
Houston — Jacksonville
8h 45m
including layover
Find flight
from$243
15:56 — 10:25
+1 day
15:56 — 20:03 UA2088 United Airlines
San Juan — Chicago
10h 57m stop
07:00 — 10:25 UA453 United Airlines
Chicago — Jacksonville
18h 29m
including layover
Find flight
from$284
18:40 — 13:28
+1 day
18:40 — 22:50 UA2036 United Airlines
San Juan — Newark
12h 10m stop
11:00 — 13:28 UA2678 United Airlines
Newark — Jacksonville
18h 48m
including layover
Find flight
from$229
01:10 — 15:03
+1 day
01:10 — 05:02 NK838 Spirit Airlines
San Juan — Atlanta
11h 27m stop
16:29 — 17:59 NK1198 Spirit Airlines
Atlanta — Columbus
19h 8m stop
13:07 — 15:03 MX401 Mexicana
Columbus — Jacksonville
37h 53m
including layover
Find flight
from$222
02:06 — 08:30
+1 day
02:06 — 05:05 NK3164 Spirit Airlines
San Juan — Orlando
4h 52m stop
09:57 — 12:17 NK3050 Spirit Airlines
Orlando — Pittsburgh
18h 13m stop
06:30 — 08:30 G41127 Allegiant Air
Pittsburgh — Jacksonville
30h 24m
including layover
Find flight
from$169
02:06 — 08:30
+1 day
02:06 — 05:05 NK3164 Spirit Airlines
San Juan — Orlando
16h 28m stop
21:33 — 23:55 NK1316 Spirit Airlines
Orlando — Pittsburgh
6h 35m stop
06:30 — 08:30 G41127 Allegiant Air
Pittsburgh — Jacksonville
30h 24m
including layover
Find flight
from$210
09:30 — 20:55
+1 day
09:30 — 13:37 NK1802 Spirit Airlines
San Juan — Boston
8h 3m stop
21:40 — 23:13 NK2523 Spirit Airlines
Boston — Washington D.C.
19h 40m stop
18:53 — 20:55 G4412 Allegiant Air
Washington D.C. — Jacksonville
35h 25m
including layover
Find flight
from$272
10:51 — 08:30
+1 day
10:51 — 13:54 NK3160 Spirit Airlines
San Juan — Orlando
7h 39m stop
21:33 — 23:55 NK1316 Spirit Airlines
Orlando — Pittsburgh
6h 35m stop
06:30 — 08:30 G41127 Allegiant Air
Pittsburgh — Jacksonville
21h 39m
including layover
Find flight
from$210
10:51 — 15:03
+1 day
10:51 — 13:54 NK3160 Spirit Airlines
San Juan — Orlando
2h 9m stop
16:03 — 18:19 NK3027 Spirit Airlines
Orlando — Columbus
18h 48m stop
13:07 — 15:03 MX401 Mexicana
Columbus — Jacksonville
28h 12m
including layover
Find flight
from$231
11:11 — 14:29
+1 day
11:11 — 13:55 NK1397 Spirit Airlines
San Juan — Miami
16h 5m stop
06:00 — 08:02 G4520 Allegiant Air
Miami — Knoxville
5h 10m stop
13:12 — 14:29 G43045 Allegiant Air
Knoxville — Jacksonville
27h 18m
including layover
Find flight
from$220
11:11 — 20:55
+1 day
11:11 — 13:55 NK1397 Spirit Airlines
San Juan — Miami
7h 3m stop
20:58 — 23:25 NK2049 Spirit Airlines
Miami — Washington D.C.
19h 28m stop
18:53 — 20:55 G4412 Allegiant Air
Washington D.C. — Jacksonville
33h 44m
including layover
Find flight
from$237
13:02 — 20:55
+1 day
13:02 — 17:14 NK2405 Spirit Airlines
San Juan — Atlanta
11h 58m stop
05:12 — 06:49 NK2343 Spirit Airlines
Atlanta — Washington D.C.
12h 4m stop
18:53 — 20:55 G4412 Allegiant Air
Washington D.C. — Jacksonville
31h 53m
including layover
Find flight
from$245
15:28 — 20:55
+1 day
15:28 — 19:45 NK1840 Spirit Airlines
San Juan — Boston
10h 15m stop
06:00 — 07:30 NK1588 Spirit Airlines
Boston — Washington D.C.
11h 23m stop
18:53 — 20:55 G4412 Allegiant Air
Washington D.C. — Jacksonville
29h 27m
including layover
Find flight
from$214
16:20 — 15:00
+1 day
16:20 — 20:57 SY784 Sun Country Airlines
San Juan — Minneapolis
10h 27m stop
07:24 — 10:25 SY1053 Sun Country Airlines
Minneapolis — Pittsburgh
2h 36m stop
13:01 — 15:00 G42763 Allegiant Air
Pittsburgh — Jacksonville
22h 40m
including layover
Find flight
from$267
16:46 — 15:03
+1 day
16:46 — 19:32 NK1038 Spirit Airlines
San Juan — Miami
2h 41m stop
22:13 — 00:49 NK122 Spirit Airlines
Miami — Columbus
12h 18m stop
13:07 — 15:03 MX401 Mexicana
Columbus — Jacksonville
22h 17m
including layover
Find flight
from$231
18:42 — 08:54
+1 day
18:42 — 21:55 NK2536 Spirit Airlines
San Juan — Orlando
47m stop
22:42 — 23:45 NK2242 Spirit Airlines
Orlando — Nashville
6h 35m stop
06:20 — 08:54 G4321 Allegiant Air
Nashville — Jacksonville
14h 12m
including layover
Find flight
from$217
20:24 — 19:09
+1 day
20:24 — 23:12 NK2222 Spirit Airlines
San Juan — Miami
8h 43m stop
07:55 — 10:31 G4511 Allegiant Air
Miami — Covington
6h 46m stop
17:17 — 19:09 G42020 Allegiant Air
Covington — Jacksonville
22h 45m
including layover
Find flight
from$169
20:24 — 19:36
+1 day
20:24 — 23:12 NK2222 Spirit Airlines
San Juan — Miami
6h 48m stop
06:00 — 08:15 G4501 Allegiant Air
Miami — Norfolk
9h 39m stop
17:54 — 19:36 G4632 Allegiant Air
Norfolk — Jacksonville
23h 12m
including layover
Find flight
from$177
*Departure and arrival times - local. Updated on June 4, 2025

Flight Information

Below we will explain in detail what the flights cost on the destination from San Juan to Jacksonville depends on and how to choose the most interesting flight option for you.

Distance between San Juan and Jacksonville is 2073 miles. Time difference between the cities is 1h. Airplanes depart 00:59 to 20:24 from 2 San Juan airports and arrive 00:59 to 20:24 to 4 Jacksonville airports. Average flight time is 3h 20m.

  • The fastest flight 3h 20m
  • Average flight time 3h 20m
  • The earliest flight 00:59
  • The latest flight 20:24
  • Distance 1289 ml

The cheapest months to travel to Jacksonville are august (from 117 $), july (from 122 $), april (from 207 $).

The most expensive months are january (from 418 $), february (from 398 $), december (from 274 $).

What is the lowest airfare San Juan to Jacksonville?

The cheapest plane ticket found by our users is $87. This airfare is for economy class on one-way F93305 flight by Frontier Airlines for August 16, 2025 which leaves Luis Munoz Marin Intl in San Juan at 07:00 am and arrives at Jacksonville Jacksonville at 10:20.

Economy class
$87
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Business class
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First class
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Popular Airlines on the Route

The flight San Juan — Jacksonville is served by 5 regular airlines and 3 low-cost airlines. Most of the flights on this route are operated by Frontier Airlines - 3 departures per week at the price of from $ 87 . And the most expensive tickets are offered by Avianca airline - from $ 740.

Direct flights

There are 1 nonstop flights on the route. The fastest direct flight is F93305 by Frontier Airlines takes 3h 20m and the cheapest is F93305 by Frontier Airlines for $87.

  • F9 - Frontier Airlines
    from $87
    Find
See more direct flights

Connecting Flights

There are 112 flights with layovers on the route. The fastest connecting flight is UA2022 by United Airlines takes 7h 29m and the cheapest is F93305 by Frontier Airlines for $165.

  • F9 - Frontier Airlines
    from $174
    Find
  • AV - Avianca
    from $543
    Find
  • SY - Sun Country Airlines
    from $267
    Find
  • UA - United Airlines
    from $165
    Find
  • NK - Spirit Airlines
    from $169
    Find
See more connecting flights

Airports

You can fly from San Juan to Jacksonville from 2 airports (Isla Grande, Luis Munoz Marin Intl).

San Juan airports

  • Isla Grande-SIG
    Find
  • Luis Munoz Marin Intl-SJU
    from $87
    Find

Jacksonville airports

  • Jacksonville-JAX
    Find
  • Craig Municipal-CRG
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  • Jacksonville NAS-NIP
    Find
  • Cecil Field-VQQ
    Find

How to book a plane ticket yourself?

How to book an air ticket yourself?
  • Fill in the search parameters — cities of departure and destination, departure and return dates and click «Find flights»
  • Select the best flight that you like. Please, check the airports of departure and arrival. Select the best fare, but pay attention to the following flight details - airports of departure and arrival, flight duration and layovers. Please use filters and sort to find the best flight.
  • Click «Buy» when you are ready — our system will redirect you to the site that sells the selected flight ticket.
  • Fill in all passenger and payment information — passport and contact information, please double check all passengers’ names and make a payment for your itinerary.
  • That's it — you will receive an email with your e-ticket usually within 10 minutes after your flight is confirmed. Please, print the e-ticket and have it with you at the airport. You would need to have only a passport and/or a required form of ID to travel. Please, check your Visa requirements if you travel outside of the United States or Canada.

    To find a plane ticket, please select dates.

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