Cheap Flights from Houston, TX to San Juan from $96

Return flight: San Juan – Houston

On Cheapflightsplus.com you will find 6 direct and 338 connecting flights from Houston to San Juan. You can compare airfare deals from 7 airlines and multiple travel sites from $96, book and save on cheap plane tickets and last minute offers. Also check out HOU-SJU flight schedule to find best flight time, convenient departure and arrival airports.

Flight Information

Below we will explain in detail what the flights cost on the destination from Houston to San Juan depends on and how to choose the most interesting flight option for you.

Distance between Houston and San Juan is 3211 miles. Time difference between the cities is 2h. Airplanes depart 05:00 to 23:57 from 15 Houston airports and arrive 05:00 to 23:57 to 2 San Juan airports. Average flight time is 4h 34m.

  • The fastest flight 4h 22m
  • Average flight time 4h 34m
  • The earliest flight 05:00
  • The latest flight 23:57
  • Distance 1996 ml

The cheapest months to travel to San Juan are october (from 96 $), january (from 96 $), december (from 106 $).

The most expensive months are february (from 182 $), june (from 140 $), september (from 118 $).

What is the lowest airfare Houston to San Juan?

The cheapest plane ticket found by our users is $96. This airfare is for economy class on one-way F94978 flight by Frontier Airlines for October 15, 2025 which leaves George Bush in Houston at 20:51 am and arrives at San Juan Luis Munoz Marin Intl at 11:01.

Economy class
$96
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Business class
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First class
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Flight Schedule Houston (Texas) to San Juan

05:30 — 22:09
15h 39m flight time
Find flight
from$111
05:30 — 09:46 Houston — Philadelphia
NK1612 Spirit Airlines
8h 36m stop
18:22 — 22:09 Philadelphia — San Juan
NK1545 Spirit Airlines
10:07 — 15:42
4h 35m flight time
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from$183
Houston — San Juan
UA1192 United Airlines
12:48 — 18:24
4h 36m flight time
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from$270
Houston — San Juan
NK1151 Spirit Airlines
13:15 — 01:04+1day
10h 49m flight time
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from$111
13:15 — 17:35 Houston — Philadelphia
NK3157 Spirit Airlines
3h 30m stop
21:05 — 01:04 Philadelphia — San Juan
NK2165 Spirit Airlines
14:18 — 01:11+1day
9h 53m flight time
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from$111
14:18 — 17:52 Houston — Orlando
NK1375 Spirit Airlines
4h 25m stop
22:17 — 01:11 Orlando — San Juan
NK3166 Spirit Airlines
15:03 — 20:38
4h 35m flight time
Find flight
from$117
Houston — San Juan
UA701 United Airlines
15:11 — 01:35+1day
9h 24m flight time
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from$111
15:11 — 18:43 Houston — Orlando
NK1702 Spirit Airlines
4h stop
22:43 — 01:35 Orlando — San Juan
NK1514 Spirit Airlines
16:24 — 21:50
4h 26m flight time
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from$114
Houston — San Juan
NK1626 Spirit Airlines
16:55 — 22:17
4h 22m flight time
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from$142
Houston — San Juan
NK2529 Spirit Airlines
18:25 — 10:06+1day
14h 41m flight time
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from$111
18:25 — 21:58 Houston — Miami
NK1631 Spirit Airlines
9h 42m stop
07:40 — 10:06 Miami — San Juan
NK1396 Spirit Airlines
18:58 — 12:02+1day
16h 4m flight time
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from$111
18:58 — 22:50 Houston — Detroit
NK524 Spirit Airlines
8h 40m stop
07:30 — 12:02 Detroit — San Juan
NK1543 Spirit Airlines
19:36 — 09:43+1day
13h 7m flight time
Find flight
from$111
19:26 — 23:51 Houston — Philadelphia
NK2231 Spirit Airlines
6h 2m stop
06:00 — 09:43 Philadelphia — San Juan
NK2303 Spirit Airlines
20:51 — 11:01+1day
13h 10m flight time
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from$96
11:26 — 15:00 Houston — Orlando
F94978 Frontier Airlines
7h 26m stop
06:00 — 09:53 Orlando — San Juan
F91824 Frontier Airlines
20:56 — 08:59+1day
11h 3m flight time
Find flight
from$107
20:42 — 00:21 Houston — Orlando
F94978 Frontier Airlines
5h 18m stop
06:00 — 08:58 Orlando — San Juan
F92250 Frontier Airlines
23:57 — 05:30+1day
4h 33m flight time
Find flight
from$184
Houston — San Juan
UA1497 United Airlines
Full flight schedule will help you in detecting at what time planes fly from Houston to San Juan. You can also specify the concrete flights and airlines on the route and how long the flight actually is. Use the calendar for today, tomorrow or other specific date as some flights are available only on certain days of the week.
*Departure and arrival times - local. Updated on October 9, 2025.

Popular Airlines on the Route

The flight Houston — San Juan is served by 7 regular airlines and 4 low-cost airlines. Most of the flights on this route are operated by Frontier Airlines - 18 departures per week at the price of from $ 96 . And the most expensive tickets are offered by United Airlines airline - from $ 905.

Direct flights

There are 6 nonstop flights on the route. The fastest direct flight is NK2529 by Spirit Airlines takes 4h 22m and the cheapest is F94978 by Frontier Airlines for $114.

  • UA - United Airlines
    from $117
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  • NK - Spirit Airlines
    from $114
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See more direct flights

Connecting Flights

There are 338 flights with layovers on the route. The fastest connecting flight is F91418 by Frontier Airlines takes 6h 11m and the cheapest is F94978 by Frontier Airlines for $96.

  • F9 - Frontier Airlines
    from $96
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  • N3 - Omskavia
    from $332
    Find
  • AV - Avianca
    from $366
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  • Y4 - Volaris
    from $449
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  • UA - United Airlines
    from $188
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  • NK - Spirit Airlines
    from $111
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  • G4 - Allegiant Air
    from $200
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See more connecting flights

Airports

You can fly from Houston to San Juan from 15 airports (Ellington Field, West Houston, Hobby, Park Ten Heliport, Andrau Airpark, George Bush, Greenway Plaza H/P, David Wayne Hooks, Transco Twr Galleria, Westchase Hilton H/P, Spaceland, Woodlawns, Marriot Astrodome Heliport, Central Bus. District, Houston Municipal).

Houston airports

  • Ellington Field-EFD
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  • West Houston-IWS
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  • Hobby-HOU
    from $200
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  • Park Ten Heliport-JPT
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  • Andrau Airpark-AAP
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  • George Bush-IAH
    from $96
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  • Greenway Plaza H/P-JGP
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  • David Wayne Hooks-DWH
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  • Transco Twr Galleria-JGQ
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  • Westchase Hilton H/P-JWH
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  • Spaceland-SPX
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  • Woodlawns-JWL
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  • Marriot Astrodome Heliport-JMA
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  • Central Bus. District-JDX
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  • Houston Municipal-SGR
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San Juan airports

  • Isla Grande-SIG
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  • Luis Munoz Marin Intl-SJU
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How to book a plane ticket yourself?

How to book an air ticket yourself?
  • Fill in the search parameters — cities of departure and destination, departure and return dates and click «Find flights»
  • Select the best flight that you like. Please, check the airports of departure and arrival. Select the best fare, but pay attention to the following flight details - airports of departure and arrival, flight duration and layovers. Please use filters and sort to find the best flight.
  • Click «Buy» when you are ready — our system will redirect you to the site that sells the selected flight ticket.
  • Fill in all passenger and payment information — passport and contact information, please double check all passengers’ names and make a payment for your itinerary.
  • That's it — you will receive an email with your e-ticket usually within 10 minutes after your flight is confirmed. Please, print the e-ticket and have it with you at the airport. You would need to have only a passport and/or a required form of ID to travel. Please, check your Visa requirements if you travel outside of the United States or Canada.

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