Cheap Flights from San Diego, CA to Jacksonville, FL from $95

On Cheapflightsplus.com you will find 1 direct and 339 connecting flights from San Diego to Jacksonville. You can compare airfare deals from 8 airlines and multiple travel sites from $95, book and save on cheap plane tickets and last minute offers. Also check out SAN-JAX flight schedule to find best flight time, convenient departure and arrival airports.

Flight Information

Below we will explain in detail what the flights cost on the destination from San Diego to Jacksonville depends on and how to choose the most interesting flight option for you.

Distance between San Diego and Jacksonville is 3355 miles. Time difference between the cities is 3h. Airplanes depart 06:15 to 22:38 from 11 San Diego airport and arrive 06:15 to 22:38 to 4 Jacksonville airports. Average flight time is 5h 2m.

  • The fastest flight 5h 2m
  • Average flight time 5h 2m
  • The earliest flight 06:15
  • The latest flight 22:38
  • Distance 2085 ml

The cheapest months to travel to Jacksonville are august (from 95 $), may (from 105 $), july (from 138 $).

The most expensive months are february (from 414 $), october (from 270 $), september (from 260 $).

What is the lowest airfare San Diego to Jacksonville?

The cheapest plane ticket found by our users is $95. This airfare is for economy class on one-way MX707 flight by Mexicana for July 5, 2025 which leaves San Diego in San Diego at 12:21 am and arrives at Jacksonville Jacksonville at 20:23.

Economy class
$95
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Business class
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First class
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Flight Schedule San Diego (California) to Jacksonville (Florida)

06:15 — 15:22+1day
30h 7m flight time
Find flight
from$158
06:15 — 07:37 San Diego — Las Vegas
NK1153 Spirit Airlines
7h 11m stop
14:48 — 21:40 Las Vegas — Covington
G41684 Allegiant Air
15h 52m stop
13:32 — 15:22 Covington — Jacksonville
G4430 Allegiant Air
06:15 — 11:43+1day
26h 28m flight time
Find flight
from$166
06:15 — 07:35 San Diego — Las Vegas
NK2369 Spirit Airlines
16h 24m stop
23:59 — 05:15 Las Vegas — Minneapolis
SY778 Sun Country Airlines
2h 33m stop
07:48 — 11:43 Minneapolis — Jacksonville
SY325 Sun Country Airlines
06:15 — 11:02+1day
25h 47m flight time
Find flight
from$168
06:15 — 07:35 San Diego — Las Vegas
NK2369 Spirit Airlines
8h 56m stop
16:44 — 23:28 Las Vegas — Grand Rapids
G4554 Allegiant Air
9h 28m stop
09:15 — 11:32 Grand Rapids — Jacksonville
G43490 Allegiant Air
06:15 — 15:34+1day
30h 19m flight time
Find flight
from$169
06:15 — 07:35 San Diego — Las Vegas
NK2369 Spirit Airlines
7h 13m stop
14:48 — 21:44 Las Vegas — Covington
G470 Allegiant Air
16h 5m stop
13:49 — 15:34 Covington — Jacksonville
G42044 Allegiant Air
06:15 — 11:02+1day
25h 47m flight time
Find flight
from$182
06:15 — 07:37 San Diego — Las Vegas
NK1153 Spirit Airlines
8h 56m stop
16:33 — 23:17 Las Vegas — Grand Rapids
G4554 Allegiant Air
9h 28m stop
08:45 — 11:02 Grand Rapids — Jacksonville
G43490 Allegiant Air
06:15 — 11:38+1day
26h 23m flight time
Find flight
from$190
06:15 — 07:37 San Diego — Las Vegas
NK1153 Spirit Airlines
11h 13m stop
17:00 — 22:09 Las Vegas — Minneapolis
SY108 Sun Country Airlines
7h 49m stop
08:06 — 11:54 Minneapolis — Jacksonville
SY325 Sun Country Airlines
06:15 — 11:38+1day
26h 23m flight time
Find flight
from$196
06:15 — 07:37 San Diego — Las Vegas
NK1153 Spirit Airlines
6h 23m stop
10:38 — 15:49 Las Vegas — Minneapolis
SY104 Sun Country Airlines
12h 39m stop
08:00 — 11:48 Minneapolis — Jacksonville
SY325 Sun Country Airlines
06:15 — 11:43+1day
26h 28m flight time
Find flight
from$198
06:15 — 07:35 San Diego — Las Vegas
NK2369 Spirit Airlines
11h 8m stop
18:43 — 23:59 Las Vegas — Minneapolis
SY108 Sun Country Airlines
7h 49m stop
07:48 — 11:43 Minneapolis — Jacksonville
SY325 Sun Country Airlines
06:25 — 18:03
8h 38m flight time
Find flight
from$138
06:25 — 11:38 San Diego — Dallas
F91426 Frontier Airlines
2h 37m stop
14:42 — 18:06 Dallas — Jacksonville
F92854 Frontier Airlines
07:45 — 11:43+1day
24h 58m flight time
Find flight
from$169
07:45 — 13:30 San Diego — Minneapolis
SY1610 Sun Country Airlines
18h 18m stop
07:48 — 11:43 Minneapolis — Jacksonville
SY325 Sun Country Airlines
12:21 — 20:23
5h 2m flight time
Find flight
from$95
San Diego — Jacksonville
MX707 Mexicana
17:43 — 11:43+1day
15h flight time
Find flight
from$166
17:43 — 19:01 San Diego — Las Vegas
NK2507 Spirit Airlines
4h 58m stop
23:59 — 05:15 Las Vegas — Minneapolis
SY778 Sun Country Airlines
2h 33m stop
07:48 — 11:43 Minneapolis — Jacksonville
SY325 Sun Country Airlines
18:23 — 11:38+1day
14h 15m flight time
Find flight
from$151
17:59 — 23:44 San Diego — Minneapolis
SY408 Sun Country Airlines
7h 49m stop
07:48 — 11:43 Minneapolis — Jacksonville
SY325 Sun Country Airlines
19:31 — 11:54+1day
13h 23m flight time
Find flight
from$166
18:58 — 20:17 San Diego — Las Vegas
NK2296 Spirit Airlines
3h 10m stop
23:59 — 05:15 Las Vegas — Minneapolis
SY778 Sun Country Airlines
3h stop
07:48 — 11:43 Minneapolis — Jacksonville
SY325 Sun Country Airlines
20:48 — 11:43+1day
11h 55m flight time
Find flight
from$164
20:48 — 22:07 San Diego — Las Vegas
NK2021 Spirit Airlines
1h 52m stop
23:59 — 05:15 Las Vegas — Minneapolis
SY778 Sun Country Airlines
2h 33m stop
07:48 — 11:43 Minneapolis — Jacksonville
SY325 Sun Country Airlines
Full flight schedule will help you in detecting at what time planes fly from San Diego to Jacksonville. You can also specify the concrete flights and airlines on the route and how long the flight actually is. Use the calendar for today, tomorrow or other specific date as some flights are available only on certain days of the week.
*Departure and arrival times - local. Updated on December 18, 2025.

Popular Airlines on the Route

The flight San Diego — Jacksonville is served by 8 regular airlines and 4 low-cost airlines. Most of the flights on this route are operated by Alaska Airlines - 49 departures per week at the price of from $ 277 . And the most expensive tickets are offered by Alaska Airlines airline - from $ 7393.

Direct flights

There are 1 nonstop flights on the route. The fastest direct flight is MX707 by Mexicana takes 5h 2m and the cheapest is MX707 by Mexicana for $95.

  • MX - Mexicana
    from $95
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Connecting Flights

There are 339 flights with layovers on the route. The fastest connecting flight is AS6233 by Alaska Airlines takes 6h 30m and the cheapest is MX707 by Mexicana for $138.

  • AS - Alaska Airlines
    from $277
    Find
  • F9 - Frontier Airlines
    from $138
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  • SY - Sun Country Airlines
    from $151
    Find
  • HA - Hawaiian Airlines
    from $636
    Find
  • MX - Mexicana
    from $262
    Find
  • UA - United Airlines
    from $270
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  • NK - Spirit Airlines
    from $158
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  • G4 - Allegiant Air
    from $302
    Find
See more connecting flights

Airports

You can fly from San Diego to Jacksonville from 11 airports (San Diego, San Diego Regional, Gillespie Field, Golden Triangle Reg., El Cajon, Lowndes County, Miramar NAS, Montgomery Field, North Island NAS, Brown Field Municipal, AFB).

San Diego airports

  • San Diego-SAN
    from $95
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  • San Diego Regional-USA
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  • Gillespie Field-SEE
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  • Golden Triangle Reg.-GTR
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  • El Cajon-CJN
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  • Lowndes County-UBS
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  • Miramar NAS-NKX
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  • Montgomery Field-MYF
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  • North Island NAS-NZY
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  • Brown Field Municipal-SDM
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  • AFB-CBM
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Jacksonville airports

  • Jacksonville-JAX
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  • Craig Municipal-CRG
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  • Jacksonville NAS-NIP
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  • Cecil Field-VQQ
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How to book a plane ticket yourself?

How to book an air ticket yourself?
  • Fill in the search parameters — cities of departure and destination, departure and return dates and click «Find flights»
  • Select the best flight that you like. Please, check the airports of departure and arrival. Select the best fare, but pay attention to the following flight details - airports of departure and arrival, flight duration and layovers. Please use filters and sort to find the best flight.
  • Click «Buy» when you are ready — our system will redirect you to the site that sells the selected flight ticket.
  • Fill in all passenger and payment information — passport and contact information, please double check all passengers’ names and make a payment for your itinerary.
  • That's it — you will receive an email with your e-ticket usually within 10 minutes after your flight is confirmed. Please, print the e-ticket and have it with you at the airport. You would need to have only a passport and/or a required form of ID to travel. Please, check your Visa requirements if you travel outside of the United States or Canada.

    To find a plane ticket, please select dates.

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