Cheap Flights from New York, NY to San Juan from $90

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On Cheapflightsplus.com you will find 2 direct and 192 connecting flights from New York to San Juan. You can compare airfare deals from 5 airlines and multiple travel sites from $90, book and save on cheap plane tickets and last minute offers. Also check out NYC-SJU flight schedule to find best flight time, convenient departure and arrival airports.

Find One-Way and Round-Trip New York to San Juan Flight Deals

To find the cheapest one way airline ticket select the date with the lowest price on the calendar below and click «Find Flights». To search for round-trip flight deals click on the link «Check prices for return flights» and select the date of the return flight. Cheapest flights in November: $90 (one-way), $154 (round-trip).

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Best Flights from New York to San Juan Today

Take a look at the list of non stop flights and flights with layovers from New York to San Juan with the lowest price of $90. The fastest direct flight takes 3h 54m and the fastest connecting – 6h 23m.

Price	Departure	Arrival	Flight Duration	Airline	Flight
from $90 Find flight	06:00 New York John F Kennedy Intl	09:54 San Juan Luis Munoz Marin Intl	3h 54m	Frontier Airlines	F93547
from $108 Find flight	06:30 New York La Guardia	14:15 San Juan Luis Munoz Marin Intl	7h 45m layover 1h 27m - Atlanta	Frontier Airlines	F93287 F92082
from $129 Find flight	12:59 New York La Guardia	07:59+1 день San Juan Luis Munoz Marin Intl	19h 0m layover 13h 5m - Orlando	Frontier Airlines	F94383 F91824

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*Departure and arrival times - local. Prices indicated for one-way flights. Information updated on September 18, 2025

Flight Schedule New York (New York) to San Juan

Full flight schedule will help you in detecting at what time planes fly from New York to San Juan. You can also specify the concrete flights and airlines on the route and how long the flight actually is. Use the calendar for today, tomorrow or other specific date as some flights are available only on certain days of the week.

Departure	Flight Details	Flight Duration	Price
05:46 — 21:50	05:46 — 08:58 NK1172 Spirit Airlines New York — Houston 7h 26m stop 16:24 — 21:50 NK1626 Spirit Airlines Houston — San Juan	16h 4m including layover	Find flight from$144
06:00 — 09:54	06:00 — 09:54 F93547 Frontier Airlines New York — San Juan	3h 54m	Find flight from$90
06:00 — 19:07	06:00 — 08:58 NK2005 Spirit Airlines New York — Miami 7h 39m stop 16:37 — 19:07 NK2221 Spirit Airlines Miami — San Juan	13h 7m including layover	Find flight from$138
06:25 — 14:20	06:15 — 08:52 F94817 Frontier Airlines New York — Atlanta 1h 27m stop 11:36 — 15:15 F92082 Frontier Airlines Atlanta — San Juan	7h 55m including layover	Find flight from$109
06:30 — 14:15	10:56 — 13:28 F93287 Frontier Airlines New York — Atlanta 1h 27m stop 17:56 — 22:47 F92082 Frontier Airlines Atlanta — San Juan	7h 45m including layover	Find flight from$108
09:55 — 18:50	09:55 — 13:06 NK2176 Spirit Airlines New York — Miami 3h 15m stop 17:28 — 20:02 NK2057 Spirit Airlines Miami — San Juan	8h 55m including layover	Find flight from$143
11:07 — 15:05	11:07 — 15:05 F93545 Frontier Airlines New York — San Juan	3h 58m	Find flight from$97
11:55 — 00:54 +1 day	11:55 — 14:40 NK2392 Spirit Airlines New York — Orlando 7h 29m stop 22:09 — 00:54 NK1989 Spirit Airlines Orlando — San Juan	12h 59m including layover	Find flight from$143
12:44 — 20:54	12:59 — 16:08 F91809 Frontier Airlines New York — Miami 2h 7m stop 06:30 — 09:12 F92284 Frontier Airlines Miami — San Juan	8h 10m including layover	Find flight from$142
12:59 — 23:54 +1 day	12:59 — 16:00 F94383 Frontier Airlines New York — Orlando 4h 59m stop 20:59 — 23:54 F93506 Frontier Airlines Orlando — San Juan	10h 55m including layover	Find flight from$108
12:59 — 02:34 +1 day	12:59 — 16:00 F94383 Frontier Airlines New York — Orlando 7h 40m stop 23:40 — 02:34 F94726 Frontier Airlines Orlando — San Juan	13h 35m including layover	Find flight from$108
12:59 — 07:59 +1 day	12:59 — 16:00 F94383 Frontier Airlines New York — Orlando 13h 5m stop 05:05 — 07:59 F91824 Frontier Airlines Orlando — San Juan	19h including layover	Find flight from$129
17:00 — 00:40 +1 day	17:00 — 18:57 F93313 Frontier Airlines New York — Raleigh 2h 24m stop 13:42 — 17:04 F91226 Frontier Airlines Raleigh — San Juan	7h 40m including layover	Find flight from$109
20:50 — 08:10 +1 day	20:50 — 23:59 F92641 Frontier Airlines New York — Miami 5h 31m stop 05:30 — 08:10 F93378 Frontier Airlines Miami — San Juan	11h 20m including layover	Find flight from$108
21:24 — 12:02 +1 day	21:24 — 23:29 NK1094 Spirit Airlines New York — Detroit 8h 1m stop 07:30 — 12:02 NK1543 Spirit Airlines Detroit — San Juan	14h 38m including layover	Find flight from$143

Departure	Arrival	Flight Details	Flight Time	Price
		stop stop	including layover	Find flight from$

*Departure and arrival times - local. Updated on September 18, 2025

Flight Information

Below we will explain in detail what the flights cost on the destination from New York to San Juan depends on and how to choose the most interesting flight option for you.

Distance between New York and San Juan is 2592 miles. Time difference between the cities is 1h. Airplanes depart 01:10 to 21:30 from 16 New York airports and arrive 01:10 to 21:30 to 2 San Juan airports. Average flight time is 3h 56m.

The fastest flight 3h 54m
Average flight time 3h 56m
The earliest flight 01:10
The latest flight 21:30
Distance 1611 ml

The cheapest months to travel to San Juan are september (from 90 $), october (from 91 $), june (from 97 $).

The most expensive months are december (from 607 $), february (from 200 $), august (from 127 $).

What is the lowest airfare New York to San Juan?

The cheapest plane ticket found by our users is $90. This airfare is for economy class on one-way F93547 flight by Frontier Airlines for September 27, 2025 which leaves John F Kennedy Intl in New York at 06:00 am and arrives at San Juan Luis Munoz Marin Intl at 09:54.

Economy class

$90

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Business class

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First class

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Popular Airlines on the Route

The flight New York — San Juan is served by 5 regular airlines and 3 low-cost airlines. Most of the flights on this route are operated by Frontier Airlines - 20 departures per week at the price of from $ 90 . And the most expensive tickets are offered by United Airlines airline - from $ 697.

Direct flights

There are 2 nonstop flights on the route. The fastest direct flight is F93547 by Frontier Airlines takes 3h 54m and the cheapest is F93547 by Frontier Airlines for $90.

F9 - Frontier Airlines

from $90

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Connecting Flights

There are 192 flights with layovers on the route. The fastest connecting flight is NK475 by Spirit Airlines takes 6h 23m and the cheapest is F93547 by Frontier Airlines for $108.

F9 - Frontier Airlines

from $108

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BW - Caribbean Airlines

from $335

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SY - Sun Country Airlines

from $325

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UA - United Airlines

from $161

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NK - Spirit Airlines

from $138

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Airports

You can fly from New York to San Juan from 16 airports (39th Street Ferry, Newyork Airport, Newyork Airport, La Guardia, Westchester County, World Trade Center, Pier 11/Wall St. SPB, John F Kennedy Intl, Flushing, East 34th St Heliport, West 30th St Heliport, Downtown Manhattan H/p, East 60th Street H/P, Battery Pk City/N. Cov, East 34th St Landing, Marine Air Terminal).

New York airports

39th Street Ferry-XNY

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Newyork Airport-NWK

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Newyork Airport-NYP

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La Guardia-LGA

from $108
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Westchester County-HPN

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World Trade Center-WTC

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Pier 11/Wall St. SPB-NWS

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John F Kennedy Intl-JFK

from $90
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Flushing-FLU

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East 34th St Heliport-TSS

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West 30th St Heliport-JRA

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Downtown Manhattan H/p-JRB

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East 60th Street H/P-JRE

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Battery Pk City/N. Cov-NBP

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East 34th St Landing-NES

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Marine Air Terminal-QNY

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San Juan airports

Isla Grande-SIG

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Luis Munoz Marin Intl-SJU

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Airplanes

There are flights to San Juan from New York by 5 airlines that use 0 aircraft brands. They range from huge modern airplanes to small-sized.

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How to book a plane ticket yourself?

Fill in the search parameters — cities of departure and destination, departure and return dates and click «Find flights»
Select the best flight that you like. Please, check the airports of departure and arrival. Select the best fare, but pay attention to the following flight details - airports of departure and arrival, flight duration and layovers. Please use filters and sort to find the best flight.
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That's it — you will receive an email with your e-ticket usually within 10 minutes after your flight is confirmed. Please, print the e-ticket and have it with you at the airport. You would need to have only a passport and/or a required form of ID to travel. Please, check your Visa requirements if you travel outside of the United States or Canada.
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