Cheap Flights from Boston, MA to San Juan from $51

Return flight: San Juan – Boston

On Cheapflightsplus.com you will find 3 direct and 261 connecting flights from Boston to San Juan. You can compare airfare deals from 4 airlines and multiple travel sites from $51, book and save on cheap plane tickets and last minute offers. Also check out BOS-SJU flight schedule to find best flight time, convenient departure and arrival airports.

Find One-Way and Round-Trip Boston to San Juan Flight Deals

To find the cheapest one way airline ticket select the date with the lowest price on the calendar below and click «Find Flights». To search for round-trip flight deals click on the link «Check prices for return flights» and select the date of the return flight. Cheapest flights in November: $51 (one-way), $87 (round-trip).
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Full flight schedule will help you in detecting at what time planes fly from Boston to San Juan. You can also specify the concrete flights and airlines on the route and how long the flight actually is. Use the calendar for today, tomorrow or other specific date as some flights are available only on certain days of the week.
Departure Arrival Flight Details Flight Duration Price
09:27 — 14:25
09:27 — 14:25 F93001 Frontier Airlines
Boston — San Juan
3h 58m
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from$51
12:43 — 17:53
12:43 — 17:53 NK934 Spirit Airlines
Boston — San Juan
4h 10m
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from$160
21:30 — 02:47
+1 day
21:30 — 02:47 NK2324 Spirit Airlines
Boston — San Juan
4h 17m
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from$589
06:00 — 19:48
06:00 — 09:32 NK2990 Spirit Airlines
Boston — Orlando
6h 28m stop
16:00 — 19:48 NK1687 Spirit Airlines
Orlando — San Juan
12h 48m
including layover
Find flight
from$73
06:00 — 00:33
+1 day
06:00 — 09:32 NK2990 Spirit Airlines
Boston — Orlando
11h 12m stop
20:44 — 00:33 NK1761 Spirit Airlines
Orlando — San Juan
17h 33m
including layover
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from$73
07:30 — 14:40
07:30 — 08:58 UA570 United Airlines
Boston — Newark
49m stop
09:47 — 14:40 UA1556 United Airlines
Newark — San Juan
6h 10m
including layover
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from$190
08:00 — 19:10
08:00 — 11:28 NK2206 Spirit Airlines
Boston — Orlando
3h 52m stop
15:20 — 19:10 NK3163 Spirit Airlines
Orlando — San Juan
10h 10m
including layover
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from$135
08:15 — 01:20
+1 day
08:15 — 09:47 F92167 Frontier Airlines
Boston — Philadelphia
10h 28m stop
20:15 — 01:20 F94462 Frontier Airlines
Philadelphia — San Juan
16h 5m
including layover
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from$101
09:45 — 12:05
+1 day
06:00 — 09:31 F91977 Frontier Airlines
Boston — Orlando
18h 41m stop
06:15 — 10:10 F92250 Frontier Airlines
Orlando — San Juan
25h 20m
including layover
Find flight
from$69
10:00 — 19:48
10:00 — 13:29 NK793 Spirit Airlines
Boston — Orlando
2h 31m stop
16:00 — 19:48 NK1687 Spirit Airlines
Orlando — San Juan
8h 48m
including layover
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from$73
10:00 — 00:33
+1 day
10:00 — 13:29 NK793 Spirit Airlines
Boston — Orlando
7h 15m stop
20:44 — 00:33 NK1761 Spirit Airlines
Orlando — San Juan
13h 33m
including layover
Find flight
from$73
11:05 — 20:45
10:56 — 13:36 NK2062 Spirit Airlines
Boston — New Orleans
1h 3m stop
15:52 — 21:49 NK1646 Spirit Airlines
New Orleans — San Juan
8h 40m
including layover
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from$98
11:15 — 20:18
06:00 — 08:09 F93057 Frontier Airlines
Boston — Raleigh
2h 25m stop
20:22 — 00:49 F91226 Frontier Airlines
Raleigh — San Juan
8h 3m
including layover
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from$97
12:25 — 20:47
12:25 — 14:00 F93011 Frontier Airlines
Boston — Philadelphia
1h 53m stop
08:00 — 12:50 F91166 Frontier Airlines
Philadelphia — San Juan
7h 22m
including layover
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from$60
12:36 — 01:20
+1 day
12:17 — 13:53 F93011 Frontier Airlines
Boston — Philadelphia
6h 7m stop
23:59 — 04:47 F94462 Frontier Airlines
Philadelphia — San Juan
11h 44m
including layover
Find flight
from$68
13:29 — 22:30
14:18 — 17:43 NK502 Spirit Airlines
Boston — Orlando
1h 45m stop
21:51 — 01:40 NK3397 Spirit Airlines
Orlando — San Juan
8h 1m
including layover
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from$98
14:00 — 00:36
+1 day
13:53 — 15:30 UA2454 United Airlines
Boston — Newark
4h 5m stop
19:41 — 00:36 UA1543 United Airlines
Newark — San Juan
9h 36m
including layover
Find flight
from$189
14:18 — 22:30
14:18 — 17:43 NK502 Spirit Airlines
Boston — Orlando
57m stop
18:40 — 22:30 NK3163 Spirit Airlines
Orlando — San Juan
7h 12m
including layover
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from$97
16:20 — 23:38
16:20 — 17:57 NK1376 Spirit Airlines
Boston — Baltimore
55m stop
18:52 — 23:38 NK1377 Spirit Airlines
Baltimore — San Juan
6h 18m
including layover
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from$136
16:37 — 01:24
+1 day
16:37 — 19:41 NK1460 Spirit Airlines
Boston — Atlanta
1h 9m stop
20:50 — 01:24 NK843 Spirit Airlines
Atlanta — San Juan
7h 47m
including layover
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from$97
19:24 — 11:18
+1 day
19:24 — 22:55 NK870 Spirit Airlines
Boston — Orlando
8h 36m stop
07:31 — 11:18 NK1687 Spirit Airlines
Orlando — San Juan
14h 54m
including layover
Find flight
from$98
19:31 — 03:34
+1 day
19:31 — 21:10 NK935 Spirit Airlines
Boston — Baltimore
1h 40m stop
22:50 — 03:34 NK3123 Spirit Airlines
Baltimore — San Juan
7h 3m
including layover
Find flight
from$97
20:30 — 09:47
+1 day
16:17 — 19:46 NK2071 Spirit Airlines
Boston — Orlando
6h 1m stop
06:19 — 10:07 NK3159 Spirit Airlines
Orlando — San Juan
12h 17m
including layover
Find flight
from$98
05:05 — 20:22
05:05 — 08:34 NK1908 Spirit Airlines
Boston — Tampa
2h 47m stop
11:21 — 12:29 NK2055 Spirit Airlines
Tampa — Miami
4h 27m stop
16:56 — 20:22 NK261 Spirit Airlines
Miami — San Juan
14h 17m
including layover
Find flight
from$190
05:45 — 20:55
05:45 — 07:29 UA1734 United Airlines
Boston — Washington D.C.
1h 6m stop
08:35 — 09:49 UA672 United Airlines
Washington D.C. — Chicago
4h 31m stop
14:20 — 20:55 UA695 United Airlines
Chicago — San Juan
14h 10m
including layover
Find flight
from$189
07:40 — 23:40
07:40 — 09:50 NK174 Spirit Airlines
Boston — Chicago
3h 19m stop
13:09 — 16:57 NK1146 Spirit Airlines
Chicago — Orlando
2h 53m stop
19:50 — 23:40 NK3163 Spirit Airlines
Orlando — San Juan
15h
including layover
Find flight
from$143
*Departure and arrival times - local. Updated on April 4, 2025

Flight Information

Below we will explain in detail what the flights cost on the destination from Boston to San Juan depends on and how to choose the most interesting flight option for you.

Distance between Boston and San Juan is 2702 miles. Time difference between the cities is 1h. Airplanes depart 05:00 to 21:54 from 4 Boston airports and arrive 05:00 to 21:54 to 2 San Juan airports. Average flight time is 4h 10m.

  • The fastest flight 3h 58m
  • Average flight time 4h 10m
  • The earliest flight 05:00
  • The latest flight 21:54
  • Distance 1679 ml

The cheapest months to travel to San Juan are february (from 51 $), november (from 54 $), january (from 58 $).

The most expensive months are december (from 91 $), january (from 58 $), november (from 54 $).

What is the lowest airfare Boston to San Juan?

The cheapest plane ticket found by our users is $51. This airfare is for economy class on one-way F93001 flight by Frontier Airlines for February 1, 2025 which leaves Logan in Boston at 09:27 am and arrives at San Juan Luis Munoz Marin Intl at 14:25.

Economy class
$51
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Business class
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First class
?
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Popular Airlines on the Route

The flight Boston — San Juan is served by 4 regular airlines and 2 low-cost airlines. Most of the flights on this route are operated by Alaska Airlines - 6 departures per week at the price of from $ 584 . And the most expensive tickets are offered by Alaska Airlines airline - from $ 1652.

Direct flights

There are 3 nonstop flights on the route. The fastest direct flight is F93001 by Frontier Airlines takes 3h 58m and the cheapest is F93001 by Frontier Airlines for $51.

  • F9 - Frontier Airlines
    from $51
    Find
  • NK - Spirit Airlines
    from $160
    Find
See more direct flights

Connecting Flights

There are 261 flights with layovers on the route. The fastest connecting flight is UA570 by United Airlines takes 6h 10m and the cheapest is F93001 by Frontier Airlines for $60.

  • AS - Alaska Airlines
    from $584
    Find
  • F9 - Frontier Airlines
    from $60
    Find
  • UA - United Airlines
    from $189
    Find
  • NK - Spirit Airlines
    from $73
    Find
See more connecting flights

Airports

You can fly from Boston to San Juan from 4 airports (Boston City Heliport, Boston RT128 Rail, Boston South Rail, Logan).

Boston airports

  • Boston City Heliport-JBC
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  • Boston RT128 Rail-ZRU
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  • Boston South Rail-ZTO
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  • Logan-BOS
    from $51
    Find

San Juan airports

  • Isla Grande-SIG
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  • Luis Munoz Marin Intl-SJU
    Find

How to book a plane ticket yourself?

How to book an air ticket yourself?
  • Fill in the search parameters — cities of departure and destination, departure and return dates and click «Find flights»
  • Select the best flight that you like. Please, check the airports of departure and arrival. Select the best fare, but pay attention to the following flight details - airports of departure and arrival, flight duration and layovers. Please use filters and sort to find the best flight.
  • Click «Buy» when you are ready — our system will redirect you to the site that sells the selected flight ticket.
  • Fill in all passenger and payment information — passport and contact information, please double check all passengers’ names and make a payment for your itinerary.
  • That's it — you will receive an email with your e-ticket usually within 10 minutes after your flight is confirmed. Please, print the e-ticket and have it with you at the airport. You would need to have only a passport and/or a required form of ID to travel. Please, check your Visa requirements if you travel outside of the United States or Canada.

    To find a plane ticket, please select dates.

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